EDIT:
Checked all but the multiplayer scenarios. EXCELLENT WORK, seems all A-OK.
Taranto Raid: 8,14 and 20,8 look a little odd, the mentioned "Atlantis" kind of docks
Crusader 40,17 has "Dunes", but seems there is no alternative tile to have a way through the escarpment and look good.
Cauldron: Escarpment 10,4 and 28,4 look odd.
Allied Disputes: 24,5 Railroad in city totally misaligned
Anzio: Could not find the hex that was reported to have misaligned roads, seems OK to me.
Only Allied Disputes had a really noticeable misalignment/oddity.